Protein Info for Ac3H11_473 in Acidovorax sp. GW101-3H11

Annotation: Recombination protein RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 169 TIGR00615: recombination protein RecR" amino acids 1 to 169 (169 residues), 195.3 bits, see alignment E=3.6e-62 PF21176: RecR_HhH" amino acids 1 to 24 (24 residues), 29.2 bits, see alignment 1.7e-10 PF02132: RecR_ZnF" amino acids 27 to 47 (21 residues), 29.8 bits, see alignment (E = 9.8e-11) PF13662: Toprim_4" amino acids 54 to 144 (91 residues), 86.7 bits, see alignment E=2.5e-28 PF01751: Toprim" amino acids 54 to 141 (88 residues), 39.5 bits, see alignment E=1.3e-13 PF21175: RecR_C" amino acids 146 to 169 (24 residues), 46.7 bits, see alignment 4.8e-16

Best Hits

Swiss-Prot: 86% identical to RECR_VEREI: Recombination protein RecR (recR) from Verminephrobacter eiseniae (strain EF01-2)

KEGG orthology group: K06187, recombination protein RecR (inferred from 86% identity to vei:Veis_0509)

MetaCyc: 54% identical to recombination mediator protein RecR (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"Recombination protein RecR" in subsystem DNA-replication or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LHX1 at UniProt or InterPro

Protein Sequence (169 amino acids)

>Ac3H11_473 Recombination protein RecR (Acidovorax sp. GW101-3H11)
MAFHLLQHDREGALALSRALSEAVGTVHHCARCHTFTEAEVCSTCLDPERDATRLCVVET
PADQSAMERTGAFKGLYFVLMGRLSPLDGVGPKEIGLQKLMERATTGEVQEVILATNFNA
EGEATAHVISEALKSRGVHVTRLARGVPVGSELEYVDLGTIAHALVDRR