Protein Info for Ac3H11_4667 in Acidovorax sp. GW101-3H11

Annotation: ABC, transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 PF00005: ABC_tran" amino acids 20 to 170 (151 residues), 112.1 bits, see alignment E=3.4e-36 PF13304: AAA_21" amino acids 138 to 199 (62 residues), 36.2 bits, see alignment E=6.8e-13

Best Hits

Swiss-Prot: 58% identical to NODI_BURMA: Nod factor export ATP-binding protein I (nodI) from Burkholderia mallei (strain ATCC 23344)

KEGG orthology group: K09695, lipooligosaccharide transport system ATP-binding protein (inferred from 84% identity to adn:Alide_0565)

Predicted SEED Role

"ABC, transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LRP4 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Ac3H11_4667 ABC, transporter, ATP-binding protein (Acidovorax sp. GW101-3H11)
MTALFEALHLRKRYGETTVVDDVSFAIAPGECLGVIGPNGAGKTTTIRMCLGLTAPDGGA
VHFTPTPGSAPLHMPRDALAIKAQLGVVTQFDTLDPDFTCAENLRVFGRYFGLKGAVMDE
RVPQLLEFGALSHKADAKPGELSGGMKRRLSLARALVNNPRLLLLDEPTTGLDPQARHLM
WERLQLLLQQGKSILLTTHFMDEAERLCSRLLVLDHGKKIAEGRPRELIAQHLEPDVVEV
FGVGAVALTQDATLRALAARVEVSGETVFFYTQNAQPLLQALGQHGHLRTLHRPANLEDL
FLKLTGRQIRQDG