Protein Info for Ac3H11_4334 in Acidovorax sp. GW101-3H11

Annotation: Fibronectin type III domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1988 PF14252: DUF4347" amino acids 1 to 164 (164 residues), 178 bits, see alignment E=1.3e-56 PF13753: SWM_repeat" amino acids 1501 to 1583 (83 residues), 84.1 bits, see alignment (E = 6.8e-28) amino acids 1613 to 1695 (83 residues), 91.1 bits, see alignment (E = 4.2e-30) TIGR02059: cyanobacterial long protein repeat" amino acids 1509 to 1585 (77 residues), 53.9 bits, see alignment (E = 8.4e-19) amino acids 1608 to 1697 (90 residues), 43.7 bits, see alignment 1.2e-15

Best Hits

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165K3N7 at UniProt or InterPro

Protein Sequence (1988 amino acids)

>Ac3H11_4334 Fibronectin type III domain protein (Acidovorax sp. GW101-3H11)
VLFIDSRVPDLQAIMAAARPGVKVVILDPSESGVAQMAKALEGLHGLASISVVSHGDEGV
LLLGNGPLFSGNLQQYEAELKTIGAALHPDGDLLLYGCDVGAGDVGAQFLRSLAEMTGAD
VAASDDSTAGAVRGGDWDLEVATGEVANSSALNLPQLDTYDHLLVTTSVNNLADLKAAIT
TGVSDNVDDVITLTGNITFTGFIDTVSITVTDGHTLQIVGGGFTIDGANKARILDVNTSG
ANSKVALDNITIRNGLIVGNGGNESMPAPDSVGAGIYNAGVLTITNSTITGNKASGGGGG
GGDSGGYYGGGGGGGGGFGTTSGGSGGTSVGAGISPTPASGINGGNGAGGTSSFGGRGGG
AAGGAGGSYSGDGNNTTGYTAGGGGGTANNGSTSIGGGGGGGGVSAVGGKGGAAAGGIYN
TSSGILTIVNSSLTNNLGAGGGGGGGVSDYAATGPGNRVGNGGAGGAGVGAIWNAGGTVR
TDNTSFNTLASGNVGAGGLGGKAAGGMNVNGADGASTSTIYTTSGGTTVTNYVPPSLTSA
TYDASTGTLVVTGVAMSNGGTIDVSKLSLAGQGGSYTLTSANVTASSATSFTVTLNAADK
LAINGILNSNGTTAVDTTTFNLAAAANWDVTASAAADLTGNGITVSNVTAPTITSATYDG
ATHVFTVTGTNLVKTVGATNDITVSALTITGEGGATRVLSTTGNVEITSATSFTFTLAGA
DIAAVDALLNQNGTSSASSSTTYNIAAADDWNSVITGGNIADLTGNGITVANAAPSILSS
TYDAATGILSVTAANIVGGDTIDVSKLALAGQGGSYTLTSANVTAVSATSFTVTLNAADK
LAINGILNNNGTSAVDTTTFNLAATASWDASRTSSADLTGNGVTVSNVSAPTITSATYDG
ATHVFTVTGTNLVKTTGATNDVTISTLTITGEGGAMRTLSTTGNVEITSATSFTFTLAGA
DIAAVDALLNQNGTSSAGATTYNLAAADDWNSVITGGNIADLSGNGITVANAAPSILSST
YDAATGILSVTAANIVGGDTIDVSKLALAGQGGSYTLTSANVTASSSTAFTVTLNAADQL
AVNGILNNNGTSAVDTTTFNLAAAASWDASRTSSADLTGNGVTVSNVTAPTITSATYDAS
THVLTVTGTGLVQTIGATNDITVSTLTIAGEGAATRILSTTGNVEVTSATSFSVTLTGAD
QAAVEALLNKNGTTSTGGSTYNLAAADDWNSVVTGGNIADATSALTVSNVAVPAITSATY
NASTGALVVTGTGFSSRAGAVNDIVANKFSLQGEGGASYALTTTADVEITSATSFTLSLS
GADRLGANLLMNKNGTSSTSANTYNLIAAEDWSAGADAAVVIADPTGNGITVTNVVAPTV
TSATYNVGTGVLVVTGSNFLTLSGANNDITANRIRFLGQGAFNYTLTDTSNVDITSNTSF
TLTMSANDKAALALRLNKDGTSSTDTTTYNIGMLEDWNTGAAVAVVIADLFGNGITVSGN
DPDAPVWASASVNGASLVLTYTDASDLDAINVAGAGAFAVVAGGVANTVTGVAVNGPAKT
VTLTLTTPVGFAEVVTVAYTDPTAGNDANAIQDAAGNDAPSLGVTPVTNTTPDTTPPVVN
TATVTANQLVLSYTEVTTLDAVNTAANGAFVVMAGGSANAVTGVAVNAAAKTVTLTLAFV
VGAGQIVTVAYTDPTAGNDINAVQDAAGNDAVSFAARPVTNLTPADPDPTPVPPTPTPVP
PTPGVPDNDGIPGPVEDQAPGIPGPGGNITPGDGNGDGIKDSEQPSVGSVGFVLSPTGES
NPGNAPPTFTTLVASSQNGKVGSGNDNSRITSLTQKDAPADAPAGLQTPIGLVSNDNSRI
TSLTQKDAPADAPAGLQTPIGLVSFTVELAQGKSSESFSLYLDPALGVNGYWKQDASGTW
VNLASEPYGGKVVMEGGRTRLDFQITDGGQFDADGKVDGIITDPGAPGHMPLSIVGLAPD
IGHHPFWF