Protein Info for Ac3H11_4325 in Acidovorax sp. GW101-3H11

Annotation: Organic solvent tolerance protein precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 812 PF19838: LptD_2" amino acids 230 to 320 (91 residues), 32.8 bits, see alignment E=3.3e-12 PF04453: LptD" amino acids 331 to 699 (369 residues), 308.8 bits, see alignment E=7.2e-96

Best Hits

Swiss-Prot: 74% identical to LPTD_ACIAC: LPS-assembly protein LptD (lptD) from Acidovorax citrulli (strain AAC00-1)

KEGG orthology group: K04744, LPS-assembly protein (inferred from 75% identity to vei:Veis_4812)

Predicted SEED Role

"Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165K5X7 at UniProt or InterPro

Protein Sequence (812 amino acids)

>Ac3H11_4325 Organic solvent tolerance protein precursor (Acidovorax sp. GW101-3H11)
VPRCQPPTVQTPSSLRPRPATAQAARLRAPVPRALAYGVALACCSWPLAALAQGPAPSAW
DAPPALRTSPLLQEKIPDAVRPQLPVFVKGDRISGQTDLNALIEGNAELRRGDTVIHADR
LDYNVPEDLAKANGKVRINRAGNVYEGTALELRVDAFEGFFSDARYQFLATQAHGDATRV
DFIDRYRAVVHNATYTTCERGNEESWEPDWVLRAGTLRLDNEEEVGTAENAVLEFKGISV
LPIPYITFPLSDKRKSGLLPPTIGLDSRDGVAYIQPYYWNIAPNRDATLRAALMTKRGAN
LGGEFRYLEPTYSGQVSADVMPADRLRDRLRWSFSGQHQGAFDTAIGGLGLNLNINRVSD
DNYWRDFGRASEPLRQRLLPGDATLSWARNDMSARVRTLKWQTLQDVNAPIVPPYDRMPQ
LQWRYAPSQLDGGFDATVELDTTRFQAARALTGQPNADRSYAMAQISRPFLSPGGFITPR
LQLHATTYQFDSPLANGDRSASRTLPTFSLDSGLVFERDAAYFGRAFLQTLEPRAFYTYT
PYRDQSRLPVYDTAANDFNFATVYTENAFGGNDRLADNNLLTLGVTTRLLDPNTGAEAAR
FGIAQRLRFSDQKVTLPGVAPVSERLSDLLLGAGITWTPQWGFDSTVQYNPKTGRSIRST
IGARYSPGNYRTVSAAYRLQRGTSEQIDIGWQWPLNDLWGDKGKDLGAGRGQGGGRWYSV
GRLNYSLQDRKLVDTVVGFEYDSCCWIGRVVLERLQSSVTTSNTRLLFQIEFVGFSRLSL
GSSPLETFKNNVPRYQNLREQVSTPSRFSNYD