Protein Info for Ac3H11_4274 in Acidovorax sp. GW101-3H11

Annotation: RNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 PF00076: RRM_1" amino acids 5 to 74 (70 residues), 78.6 bits, see alignment E=1.3e-26

Best Hits

Swiss-Prot: 53% identical to RBG7_ARATH: Glycine-rich RNA-binding protein 7 (RBG7) from Arabidopsis thaliana

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_6011)

Predicted SEED Role

"RNA-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165K1Y7 at UniProt or InterPro

Protein Sequence (178 amino acids)

>Ac3H11_4274 RNA-binding protein (Acidovorax sp. GW101-3H11)
MGNKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAA
IHGMNGQPLGGRSIVVNEARPMEPRPPRSGGFGGGGGGGYGGGGRSGGGGGYGGGREGGG
GGYGGGGRDGGGGYGGGGGGGRGEGGFRSPYGSGSRNGGGGGRNGGGGGYGGGGNGGY