Protein Info for Ac3H11_4145 in Acidovorax sp. GW101-3H11

Annotation: predicted integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 63 to 85 (23 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 185 to 213 (29 residues), see Phobius details amino acids 235 to 263 (29 residues), see Phobius details PF09955: DUF2189" amino acids 93 to 215 (123 residues), 128.2 bits, see alignment E=1.1e-41

Best Hits

KEGG orthology group: None (inferred from 82% identity to vei:Veis_3410)

Predicted SEED Role

"predicted integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165M4P8 at UniProt or InterPro

Protein Sequence (287 amino acids)

>Ac3H11_4145 predicted integral membrane protein (Acidovorax sp. GW101-3H11)
MTVTSSKPAPDALSTPDPSESQHAEAIANRVKAQTAQPVELQPLGLADPFRWLLRGLGDV
RAAPGIALFYGLCFWGMAVVLGWVFRTRPEYTMSMASGCLLLGPFLAMGLYDTSRRREAE
LKPQLSESLTCWDSHMGSMGMLVLVLVVLELLWGRASLVVFAVFFNTGMPSTTGVLQAVF
NAQNWSFVAVYAVVGGVFAALVFSTSVVSIPMILDRDTDALTAGITSMRVVLENPLVMLL
WGALITTIVAASLWFWGVGLLLAGPVLGFASWHAYRASVVPLRPAAA