Protein Info for Ac3H11_4038 in Acidovorax sp. GW101-3H11

Annotation: Rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 107 to 132 (26 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 247 to 256 (10 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 317 to 317 (1 residues), see Phobius details amino acids 325 to 348 (24 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 22 to 378 (357 residues), 396 bits, see alignment E=8.1e-123 PF01098: FTSW_RODA_SPOVE" amino acids 26 to 380 (355 residues), 313.4 bits, see alignment E=9.9e-98

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 86% identity to vei:Veis_2191)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LZE1 at UniProt or InterPro

Protein Sequence (390 amino acids)

>Ac3H11_4038 Rod shape-determining protein RodA (Acidovorax sp. GW101-3H11)
MAVVFEKPTLSQRLVPLFRGFDLPLILVVALLTCAGLTAMYSSGFDHGTRFADHGRNMLI
AGAILFVVSQVPPQKIMACSVPLYAAGVALLVAVALFGITKKGATRWINVGIVIQPSEIL
KIAMPLMLAWWFQKREGTLRPLDFVAAGLLLVVPVGLIMKQPDLGTSLLVLAAGLSVIFF
AGLSWKMVLPPVVIGGVGIAVLVIMGDAWCADGVRWPVLHDYQQQRICTLLDPTRDPLGK
GFHIIQGMIAIGSGGVWGKGFMAGTQTHLEFIPERTTDFIFAAYSEEFGLAGNLFLIVCF
LLLVWRGLAIAVGATSLFGRLMAGAVSMIFFTYAFVNMGMVSGILPVVGVPLPFISYGGT
AMVTLGLALGILMSVARAQKQDTKDPRAAI