Protein Info for Ac3H11_3981 in Acidovorax sp. GW101-3H11

Annotation: UPF0301 protein YqgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 PF02622: DUF179" amino acids 19 to 186 (168 residues), 171.5 bits, see alignment E=6.8e-55

Best Hits

Swiss-Prot: 88% identical to Y1517_VEREI: UPF0301 protein Veis_1517 (Veis_1517) from Verminephrobacter eiseniae (strain EF01-2)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 88% identity to vei:Veis_1517)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LY75 at UniProt or InterPro

Protein Sequence (199 amino acids)

>Ac3H11_3981 UPF0301 protein YqgE (Acidovorax sp. GW101-3H11)
MSFDSAPINLTHHFLIAMPGLEDESFARSVVYLCEHSERGALGLIINKPSDITLKSLFDK
VDLSLRREDLTREPVFQGGPVQTERGFVLHEPMLMDKAETDESAYASTMTIPGGLEMTTS
KDVLEALSTGAGPRRVLITLGYSSWGEGQLETELAENAWLTVAADLSVIFDTPVPERYDR
ALSLLGLQAWMLSPEAGHA