Protein Info for Ac3H11_393 in Acidovorax sp. GW101-3H11

Annotation: Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 transmembrane" amino acids 13 to 33 (21 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 6 to 189 (184 residues), 41 bits, see alignment E=2.3e-14 PF00672: HAMP" amino acids 216 to 266 (51 residues), 43.6 bits, see alignment 4.4e-15 PF00015: MCPsignal" amino acids 331 to 485 (155 residues), 187.9 bits, see alignment E=2.1e-59

Best Hits

KEGG orthology group: None (inferred from 48% identity to aav:Aave_2436)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LG97 at UniProt or InterPro

Protein Sequence (529 amino acids)

>Ac3H11_393 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) (Acidovorax sp. GW101-3H11)
MNVLQNLSIKTRLGIGYLVITGALILVAIMGLHGEAQTQESLDNQVNHLNVVKSLGNQVL
DAANARAISARNLMIAGSKEDAAAELRLIGAAHDGMGRALKSVEEALQAAPPETTPLRSL
LAQIKETEAAYGPIALEITRLGSQGEKDVAIQKINTECRPLLAKLVGNIDAFLAESDAIS
KRANEQSVRQFESLRLQLIVLSVAMVLFACVLGIATMRSIVRPLSEASRATQEFARGNLA
TPLVAQGKDEIATVVASMEAMRQSLSNLVPGVRQGSESVSTASAEIAQGNQNLSMRTEQQ
ASALQQTAASMEQLGSTVKQNADNAVNANRLAHSASTVAQQGGDVVAMVVATMKDINDSS
RKINDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIK
QLITESVGRVEHGTALVDKAGQTMTEVVASIRNVTHIMGEISAASSEQSAGVTQVGEAVT
LMDQATQQNAALVEEMAAAASSLRGQADDLVSAVAVFRIHGSGSALLLK