Protein Info for Ac3H11_389 in Acidovorax sp. GW101-3H11

Annotation: TRAP transporter solute receptor, TAXI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details PF16868: NMT1_3" amino acids 70 to 257 (188 residues), 55.9 bits, see alignment E=5e-19

Best Hits

KEGG orthology group: None (inferred from 75% identity to ajs:Ajs_2606)

Predicted SEED Role

"TRAP transporter solute receptor, TAXI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LG69 at UniProt or InterPro

Protein Sequence (455 amino acids)

>Ac3H11_389 TRAP transporter solute receptor, TAXI family (Acidovorax sp. GW101-3H11)
MSQAFRNTLLSLRDLIVSAGPLAFLAVGLLALAYWWLNPNPPKTVTLATGPAQSAYEEFG
KRYQKALAVDGIEVVLLPSEGSSHNLQLLREGKADVAFVQGGTAELLPDDPDELVSLGNL
FVEPVWLFYRTETAQRMYNTPRLDGLRQLRGLHVNVGSQGSGVPTLMERLLEANKVERGA
VKLSRLDQTPATVDFLAGKLDALVFASAPESLMVQMLLQTPGVQLLDFAQHEAYARRFPF
LTPVTLPRGVVDLASNVPVRDVRLVASTTSLLAREGTHPALLTLFAQNAQKLHSGAGWFN
RAREFPNARNSELPTAKEADRAMNEAVPMLQRYLPFWIANLIERMWLVLGILLAIMLPLS
RIVPPLYQFRVRSRVFRWYGRLREIESDLEIGKTDTAELLKALSALEAQAEKVSVPLSYA
DELYALRNHIHLVRKKLLRVSEGGEPKPIPEAEAS