Protein Info for Ac3H11_3843 in Acidovorax sp. GW101-3H11

Annotation: Protein containing domains DUF404, DUF407, DUF403

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 889 transmembrane" amino acids 601 to 618 (18 residues), see Phobius details PF14403: CP_ATPgrasp_2" amino acids 123 to 510 (388 residues), 476.8 bits, see alignment E=7.1e-147 PF04174: CP_ATPgrasp_1" amino acids 123 to 450 (328 residues), 319.9 bits, see alignment E=2.7e-99 PF04168: Alpha-E" amino acids 559 to 876 (318 residues), 184.9 bits, see alignment E=4.3e-58

Best Hits

KEGG orthology group: None (inferred from 64% identity to vap:Vapar_3406)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LUU5 at UniProt or InterPro

Protein Sequence (889 amino acids)

>Ac3H11_3843 Protein containing domains DUF404, DUF407, DUF403 (Acidovorax sp. GW101-3H11)
VTNPNDRLLPTDLPESAAQLAAALAPTAAAGHFDELRGVAAPARTAPTDRMAGAASAPVS
IANNQDLSRPWADFFEQLGPEGFPDLDRRMASLQRQVRDNGVTYNVYADADGPQRPWSVD
LFPLILSQGDWAHIERGVLQRARLLDRVMADVYGPQELLRTGLLPSALVQGHPGYLRPMH
GVQPVGGTHLPIAAFDMARDAQGGWWVVTQRTQAPSGLGYLLENRLLISRLFPEAFSQMH
VQRLAATYRALLDGLRQMSPAGQDARIVLLTPGPYNETYFEHAYLARYLGLTLVEGNDLT
VRDARLYLKTLHGLQPVHGILKRLDDEFLDPLELRSDSRLGVPGLLQAIRAGNVLVANAP
GSAFLESSAMLGFMPALSRHLLGEELALPSLPTWWCGEQAAQQAVLPQLPHSVIRPTWPS
LQRPPVLGGSLSPQDLARWTERIQGQGDEYTVQAYLPLSQMPTWRTEAGNDSNGDSGSHI
APRSVMLRVFAVCDGPGSWRVLPGGLARIATDEREIASMQRGGSSADVWVQTDGPVDTTT
LLAHNQSAPAVVHRSRQVTSRAAENLFWLGRYTERTENVTRLARIALQCLNGEDQSSQPL
LAWLSALAVGQGLVLPSVPPATQARRVFERSLIAGLTQPALVTSVGYNLRGILGAASAVR
DRLSQEHWHLSVSTEAEFFAQRANGAGGTDDGDYSPLEALRQLETLSGRTAAMTGQQTDR
MTRDDGWRLLSIGRHLERLGFLAAALEGGLQTGAVFDESGFEAMTGLFDSTITFHAQYQQ
RRDMPALLDLLVIDRDNPRSLAWVAQTLRGRIAKIEAAAGTPGESAATGIPEASELSLAA
LCAQDAEGRYAALEQYLGACVRGVMGLSDLLATRYFTHSVDALRHSVGA