Protein Info for Ac3H11_3679 in Acidovorax sp. GW101-3H11

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 PF13560: HTH_31" amino acids 12 to 64 (53 residues), 31.5 bits, see alignment 3.6e-11 PF13443: HTH_26" amino acids 12 to 63 (52 residues), 22.9 bits, see alignment 1.7e-08 PF01381: HTH_3" amino acids 13 to 67 (55 residues), 29.3 bits, see alignment 1.4e-10 PF06114: Peptidase_M78" amino acids 163 to 282 (120 residues), 69.4 bits, see alignment E=5.1e-23

Best Hits

KEGG orthology group: None (inferred from 77% identity to bpr:GBP346_A3233)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>Ac3H11_3679 Transcriptional regulator (Acidovorax sp. GW101-3H11)
MTKGIRDLQPARLEQALAARQLTKGQLASLVGVAASTVTKWCQGAQAPEAGAFERLASVL
NVQAEWLTRPMLQPVSPPLARSNASALKAARAKLEARTEWVQEIAVLLSAHVDYPDVNLP
ARDFREPEQISNADIEAAAEECRALWQLGTGPIQDLALATEGAGIIIAREETEISAIEGL
SSWSAILGRPIIFLSADKANGFRSRFDLAHEIGHLILHRYIPRADDRDRHNQMEKQAHRF
AGALLLPAETFANEVRVPTNLDNLLTLKKRWGASVAAMMMRLHALGLLTDEEKLVLFKRR
SARWGAKSEPDDDQWKPEEPRLMRRTLELLVSAGILSTEAIPRYLGLSARDIEHLCRLRE
NYFANPSGVVDLATLRSARAPMQQSSQVNDLQLGTVVSLLNRRK