Protein Info for Ac3H11_3621 in Acidovorax sp. GW101-3H11

Annotation: RND efflux system, outer membrane lipoprotein, NodT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 18 to 468 (451 residues), 410.1 bits, see alignment E=6.1e-127 PF02321: OEP" amino acids 79 to 264 (186 residues), 110.1 bits, see alignment E=6.1e-36 amino acids 286 to 467 (182 residues), 91.2 bits, see alignment E=3.8e-30

Best Hits

KEGG orthology group: None (inferred from 69% identity to adn:Alide_3058)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165J3T9 at UniProt or InterPro

Protein Sequence (480 amino acids)

>Ac3H11_3621 RND efflux system, outer membrane lipoprotein, NodT family (Acidovorax sp. GW101-3H11)
MTISPTFSRRTAWPVALASGLWLAGCAQTPPYERPGMDIPAAYKEQAAAQAQGIWRPAQP
QAAPTLPPTWWTVYGDAVLDRLQQQADANSPTLAQSAARLRAAQAAVASSGAAALPTVGA
NASSSRARSGTQLSDGSSTSHSLGLSASWELDLWGRVSAGVSAAQASAQASADDLAAARL
SLQAAVAQTYFSLRTAEAQATLLAETLKAYNKSWELTRNRQAAGVASSADVAQAEVQYKT
TQVQLLEAQTTRSQLEHALAALLGQAPAAFALEATAALPAPADVPQALPSDLLQRRPDIA
AAERRVAAANAQIGVARAAYFPALTLSAAGGYRGSPLSDLFSAPNLFWSLGPALAASIFD
GGARSAAVETARANHAQVTAAYRQTVLTALQEVEDNLTAAAALAQEEQLQREATAAAQRA
LDVVENQYRAGTVGYLNVLSAQTTVLSSQRSLIDVKSRRLSAVNALLKNVAGRWEALPPA