Protein Info for Ac3H11_3576 in Acidovorax sp. GW101-3H11

Annotation: integral membrane protein-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details PF10027: DUF2269" amino acids 6 to 154 (149 residues), 203.5 bits, see alignment E=9.3e-65

Best Hits

KEGG orthology group: None (inferred from 75% identity to vpe:Varpa_5983)

Predicted SEED Role

"integral membrane protein-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165J1V7 at UniProt or InterPro

Protein Sequence (158 amino acids)

>Ac3H11_3576 integral membrane protein-like protein (Acidovorax sp. GW101-3H11)
MSLYLTLKWLHIVSSVLLVGTGLGSAFYMFFTNRSGNVQAQAVVTRLVVRADWWFTTPTV
LIQPATGLAMAAMAGLPWSTPWLAVSIALYLVAGACWLPVVWLQLRMRDMAAQAVQGDGV
LPPLYWRYARWWEALGYPAFVAMAVVFYLMVNKPALGF