Protein Info for Ac3H11_3520 in Acidovorax sp. GW101-3H11

Annotation: TRAP-type C4-dicarboxylate transport system, large permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 54 to 74 (21 residues), see Phobius details amino acids 94 to 123 (30 residues), see Phobius details amino acids 138 to 163 (26 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 240 to 257 (18 residues), see Phobius details amino acids 271 to 294 (24 residues), see Phobius details amino acids 314 to 342 (29 residues), see Phobius details amino acids 355 to 384 (30 residues), see Phobius details amino acids 396 to 423 (28 residues), see Phobius details PF06808: DctM" amino acids 7 to 415 (409 residues), 411.8 bits, see alignment E=3e-127 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 419 (403 residues), 504.3 bits, see alignment E=1.1e-155

Best Hits

Swiss-Prot: 59% identical to YIAN_ECOLI: 2,3-diketo-L-gulonate TRAP transporter large permease protein YiaN (yiaN) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 85% identity to vap:Vapar_3327)

MetaCyc: 59% identical to 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-235

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165J0N2 at UniProt or InterPro

Protein Sequence (426 amino acids)

>Ac3H11_3520 TRAP-type C4-dicarboxylate transport system, large permease component (Acidovorax sp. GW101-3H11)
MTVFIFLGSLLAAMAIGVPIAYALLVSGAALMWHLDLFDAQILAQNVINGADSFPLLAVP
FFMLAGEIMNVGGLSQRIVKLALTLVGHKRGGLGFVAILAACMLAALSGSAVADTAALAA
LLLPMMVKAGHDKARAGGLIASAGIIAPVIPPSIGFVVFGVAANVSISKLFLAGIVPGLL
MGVAIAVTWYWVSQRENVTPPPKASTAEKLQALKESTWALFLPVIVIVGLKMGVFTPTEA
AAVAAVYALLVATLVYRELHWRQLTDVFISAAKTTAVIMFLVAAAMVSAWLITVADIPRQ
LVSLLKPLMEHPTLLLIAIMVLVMAVGTAMDMTPTILILTPVLMPVVKAAGIDPVYFGVL
FIMNNAIGLITPPVGTVLNVVAGVGKMRMDEVTRGVIPFMAAQFAMMFLMVLFPSIVLVP
MRWFIG