Protein Info for Ac3H11_3444 in Acidovorax sp. GW101-3H11

Annotation: Ribonuclease BN (EC 3.1.-.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 51 to 72 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 164 to 188 (25 residues), see Phobius details amino acids 208 to 230 (23 residues), see Phobius details amino acids 242 to 265 (24 residues), see Phobius details amino acids 271 to 296 (26 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 40 to 306 (267 residues), 160.7 bits, see alignment E=2.7e-51

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 70% identity to dac:Daci_0258)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KHP0 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Ac3H11_3444 Ribonuclease BN (EC 3.1.-.-) (Acidovorax sp. GW101-3H11)
MTAPPPSLMATSLARIAQPLLPLWRLVQPFWRAAQMWLDADGLRMSAAMSFYGMLSLAPL
LLLLVGVLGWWVDRSYLESSLVAQVQSVMGQQVADVVRQAMASAQAPSEGRLASAIGFVV
LVSGATGVFVELQSALERLWRRDGYTPPQRAAWWRMASLRLRGLAYVLALGFLLMVSLAL
STLIHLLAGWAGERLTVAHLPTLAPLAPLLQVVNEAIAFGFAVALFVGLMRIGAGPKPSL
RYLVMGAVVGATLFTVGKQLLAWYLSTAAVVSAYGAAGSLVVLLMWIYFSSAILLFSASC
AQALEQALHPGPRRPVGWARWTAAARARVQEL