Protein Info for Ac3H11_3442 in Acidovorax sp. GW101-3H11

Annotation: Outer membrane lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 50 (21 residues), see Phobius details PF05433: Rick_17kDa_Anti" amino acids 156 to 196 (41 residues), 40.7 bits, see alignment 9e-15

Best Hits

Predicted SEED Role

"Outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KI42 at UniProt or InterPro

Protein Sequence (267 amino acids)

>Ac3H11_3442 Outer membrane lipoprotein (Acidovorax sp. GW101-3H11)
MNKDMTMNLTVSSPASPVPAAAPAGPALKWMWAAIGALGVSVLALGATLVMQNRTPSAAD
ATAPAALAAAPRTPESEIIEEKRAQAPVVPAQNAMNSGANYRPQTGGSAGRSGDMAGGMA
PGGAAQPVRAAAPVCRSCGRVESVQAVQQAAPATGVGAVAGGVLGAVVGNQIGKGSGRTA
ATVLGAVGGGYVGHKVEERTRTTTVYQVAVRMEDGSLRHFQRAEPTAVGTPVVLQGKGFR
VDQGGSARAADPYAQPQPGAVRVSDTY