Protein Info for Ac3H11_3432 in Acidovorax sp. GW101-3H11

Annotation: putative permease component of branched-chain amino acid transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 62 to 88 (27 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 186 to 210 (25 residues), see Phobius details amino acids 227 to 250 (24 residues), see Phobius details amino acids 257 to 274 (18 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 378 to 395 (18 residues), see Phobius details amino acids 401 to 420 (20 residues), see Phobius details amino acids 427 to 447 (21 residues), see Phobius details amino acids 471 to 491 (21 residues), see Phobius details amino acids 521 to 540 (20 residues), see Phobius details amino acids 560 to 583 (24 residues), see Phobius details amino acids 594 to 614 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 10 to 290 (281 residues), 116.9 bits, see alignment E=4.9e-38 amino acids 349 to 605 (257 residues), 129.1 bits, see alignment E=8.6e-42

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein K01998, branched-chain amino acid transport system permease protein (inferred from 89% identity to vpe:Varpa_0212)

Predicted SEED Role

"putative permease component of branched-chain amino acid transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KHI4 at UniProt or InterPro

Protein Sequence (635 amino acids)

>Ac3H11_3432 putative permease component of branched-chain amino acid transport system (Acidovorax sp. GW101-3H11)
MSFSGFIVQLINGLASASSLFLVAAGLSLIFGVTRIVNFAHGSFFMVGIYVAYSLVERLS
GALGFWVALPLAALIVGVLGALIEVVLLRRIYKAPELFQLLATFALVLVIKDAVLWLWGP
DELLGPRAPGLSGSVSLLGRQFPSYDLFLIVVGPLVLGAVWLLLTRTRFGTLVRAATQDR
EMVSALGVNQAWLFTAVFALGAMLAGLGGALQLPREPATLEMDLHTIGAAFVVVVVGGMG
SIPGAYAAALLISEIKAICIWLGVVDVFGLSVSFSKLTLVVDFLVMAVVLVWRPWGLFGR
PQAPSRYVGMQEEPLRRPGKAYLVAAAVLGLLLAAAPVLTAQSPYTTVLLIDLLIAALFA
ASLHFIMGPAGMHSFGHAAYFGLGAYGAALLVRSLGLPMEIALVVAPLVAAAGAFVYGWF
AVRLSGVYLAMLTLAFAQITWAITYQWDSFTGGSNGLTGVWPAAWLADKRMYYWLTLALV
GAGVWWLRRVLFSPFGYALRAGRDSVLRADAIGIDVKRMQWAAFVVAGTAAGLAGALYAF
SKGSISPESLAVGKSVDGLVMVLLGGIQTLAGPVVGAVTFTWLHDTVARNTDYWRAMLGA
IILILVLLFPQGIAGTIKQIFDNMRDAKNTKEGTA