Protein Info for Ac3H11_3351 in Acidovorax sp. GW101-3H11
Annotation: Putative periplasmic substrate-binding transport protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02016, iron complex transport system substrate-binding protein (inferred from 62% identity to bam:Bamb_1693)Predicted SEED Role
"Putative periplasmic substrate-binding transport protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A165KFR6 at UniProt or InterPro
Protein Sequence (391 amino acids)
>Ac3H11_3351 Putative periplasmic substrate-binding transport protein (Acidovorax sp. GW101-3H11) MTLTLSRWRPAQAARYVLATFLCALAAAATAPAQAQTTTHTVTDLAGRSVTLPAQVDRIL LGEGRLLPALGVFERQDVARRLVGMMGDYETLDAAGYAQWRNRFPQLDKVPRVGRNNAGS FSDEQAIALRPQLAILGLAGGHGPSKNDRETLARLEAAGVAVVFVDFRHDPLKNTTRSME LLGAVLGKRQEAQAFNSFWRAQLERVESRLRSLPAGTRHPAVFLENRVGLADECCATMVG LVGVLLDAAGADNVARGRIPGEHGTLNPEFLIATQPRLYIGTGIGSMATAEKSPLRIVLG ADATPEAARASLLRATQRRGIAQLQAVQQPGRAHAIWHHYYNSPFNVVAVQVFAKWLHPE LFADLDPRATLQTMFTQFQPIPLTGVYWTSL