Protein Info for Ac3H11_3156 in Acidovorax sp. GW101-3H11

Annotation: Succinate dehydrogenase cytochrome b-556 subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 29 to 53 (25 residues), see Phobius details amino acids 68 to 94 (27 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details TIGR02970: succinate dehydrogenase, cytochrome b556 subunit" amino acids 7 to 137 (131 residues), 102.3 bits, see alignment E=1e-33 PF01127: Sdh_cyt" amino acids 18 to 135 (118 residues), 85 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: K00241, succinate dehydrogenase cytochrome b-556 subunit (inferred from 77% identity to ajs:Ajs_2793)

Predicted SEED Role

"Succinate dehydrogenase cytochrome b-556 subunit" in subsystem Succinate dehydrogenase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165IU32 at UniProt or InterPro

Protein Sequence (144 amino acids)

>Ac3H11_3156 Succinate dehydrogenase cytochrome b-556 subunit (Acidovorax sp. GW101-3H11)
MTELAKKRPEFRNINAFKDLTTYRMTPAAWVSILHRASGLIMFLLLPFIIWMFDTSVSSE
ISFARFSAAFNIGIGFVPGWFIKLVALALIWSYLHHFCAGLRHLWMDVSHSAVNKQFGKT
SALSVFAVSIALALVLGAKLFGLY