Protein Info for Ac3H11_312 in Acidovorax sp. GW101-3H11

Annotation: DedA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 transmembrane" amino acids 20 to 35 (16 residues), see Phobius details amino acids 48 to 71 (24 residues), see Phobius details amino acids 76 to 104 (29 residues), see Phobius details amino acids 151 to 158 (8 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details PF09335: SNARE_assoc" amino acids 71 to 196 (126 residues), 71.2 bits, see alignment E=5.9e-24

Best Hits

Swiss-Prot: 52% identical to DEDA_ECOLI: Protein DedA (dedA) from Escherichia coli (strain K12)

KEGG orthology group: K03975, membrane-associated protein (inferred from 90% identity to dia:Dtpsy_1467)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JNE9 at UniProt or InterPro

Protein Sequence (237 amino acids)

>Ac3H11_312 DedA protein (Acidovorax sp. GW101-3H11)
VPQADGDNAATFFTSGAPTGLPMELVTFLIDFILHVDKYLEMFVQNYGAWVYALLFLIVF
VETGVVVMPFLPGDSLLFIVGALCGAGMMSFPLACAILVVAAILGDQCNYSIGRFFGPKV
FQWEDSRWFNRRAFDQAHNFYEKYGGITIVLARFMPFIRTFAPFVAGVAEMNRAKFSAYN
VGGALVWVLGICTAGYFFGNLPFVREHLDKIIWALIFVPGLIAIFGAWRAGRQAKTA