Protein Info for Ac3H11_2974 in Acidovorax sp. GW101-3H11

Annotation: Cytochrome c-type biogenesis protein Ccs1/ResB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 transmembrane" amino acids 27 to 47 (21 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details amino acids 647 to 665 (19 residues), see Phobius details PF05140: ResB" amino acids 27 to 701 (675 residues), 477.7 bits, see alignment E=2.4e-147

Best Hits

KEGG orthology group: K07399, cytochrome c biogenesis protein (inferred from 78% identity to aaa:Acav_0958)

Predicted SEED Role

"Cytochrome c-type biogenesis protein Ccs1/ResB" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165L3U6 at UniProt or InterPro

Protein Sequence (717 amino acids)

>Ac3H11_2974 Cytochrome c-type biogenesis protein Ccs1/ResB (Acidovorax sp. GW101-3H11)
MSDNTQGLRIQSGSQAWRAGIELLSSMRFAISLLTVICIASVIGTVLKQHEPAVNYVNQF
GPFWAELFGAIQLNAVYSAWWFLLILAFLVISTSLCIARNTPKILVDLKAYKENIREQSL
KAFHHKAQADLPASAEAEARRMGALLAGGGWKVRLQQRDTAAGPGTGWMVAAKAGAANKI
GYIAAHSAIVLVCVGGLLDGDLIVRAQMLLGGKTPYQGGGLIADVKPEHRLSERNPTFRG
NLLVAEGTQSSTAILNQSDGVLLQDLPFAIELKKFIVEHYSTGMPKLFASEIVIHDKATG
EKTPARVEVNHPASYKGIEIYQSSFDDGGSHLKLRAAPMVAGAKPFDVEGVVGGSTQLTN
KGGGPGSDTLTLEFTALRTINVENFGGAGPGGSGADVRKVDLRESVESRLGAANKTVTKK
ELRNVGPSVSYKLRDAAGQAREFHNYMLPVDTGDGVPVFLLGVRESPADPFRYLRVPADD
NGSMDGFLRMKALLADPDAREQAVRRYVSQAMDSSRPELAEQLRLSASRALALFAGEGMV
AGKPTGGLQAVSDFMEANVPEAERARAGEVLVRILNGTLFEVAQLARKQAGQAPLQHDDR
TQGFMTQAVLSLSDAQIYPAPLAFELKDFTQVQASVFQVARAPGKNIVYLGCALLILGIF
AMLYVRERRVWVWVAPQEGRTHATMALSTNRKTLDSDQEFAQLAHKLIGASPREGTA