Protein Info for Ac3H11_2872 in Acidovorax sp. GW101-3H11

Annotation: Putative diheme cytochrome c-553

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00034: Cytochrom_C" amino acids 47 to 145 (99 residues), 24.8 bits, see alignment E=4.5e-09 amino acids 318 to 405 (88 residues), 51.8 bits, see alignment E=1.7e-17 PF13442: Cytochrome_CBB3" amino acids 316 to 398 (83 residues), 48.1 bits, see alignment E=1.2e-16

Best Hits

KEGG orthology group: None (inferred from 67% identity to aav:Aave_3387)

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165L213 at UniProt or InterPro

Protein Sequence (426 amino acids)

>Ac3H11_2872 Putative diheme cytochrome c-553 (Acidovorax sp. GW101-3H11)
MKRILWTISCALAALGMAAAAVVTLNLRGEEPLPATETLQSTPALVQRGEYLARVGNCMA
CHTTQGGAPFAGGRGIETPFGVVHSSNLTPDKAQGIGSWTSAEFWRAMHHGRSKDGRLLY
PAFPYPNYTQVTREDSDAIFAYLQSQPAVAEPNRAHALRFPYNTQAALGVWRALFFTPGA
PQPEATQSAEYNRGAYLVNGLGHCTACHTPRNALGATTDAKAFTGGLIPVQNWYAPALNA
AHEAGVKEWKTDDVVALLKTGVAPQGSVLGPMAEVVFRSAQHLSDADARAMAVYLQALPQ
QEHRALAAGAAPPASALARGAKVYEQHCAQCHGDQGQGEPGAFPALAGNRAVTLADPTNL
VRVVLQGGYLPATAGNPRPHGMPPFQQLLSDEDIAAVTTLVRNSWGNRAPGVGTIEVYRA
RERRGL