Protein Info for Ac3H11_2820 in Acidovorax sp. GW101-3H11

Annotation: IncF plasmid conjugative transfer protein TraG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 924 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 373 to 395 (23 residues), see Phobius details amino acids 397 to 398 (2 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details PF07916: TraG_N" amino acids 3 to 466 (464 residues), 274.3 bits, see alignment E=1.1e-85

Best Hits

KEGG orthology group: K12056, conjugal transfer mating pair stabilization protein TraG (inferred from 94% identity to adk:Alide2_2819)

Predicted SEED Role

"IncF plasmid conjugative transfer protein TraG" in subsystem Type 4 secretion and conjugative transfer

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165L0Z8 at UniProt or InterPro

Protein Sequence (924 amino acids)

>Ac3H11_2820 IncF plasmid conjugative transfer protein TraG (Acidovorax sp. GW101-3H11)
MWEIYAYQNADSLFGVFNASAAIHASGDYASAVAAVAFCGFVAALIAYAFAPEKLQGWKW
LASVVLVFGILIVPKVTVGIVDKTGGSPVKVVDNVPFGVALLGSLTSTIGHTLTGLFETA
FQVIPGAGALPSELSYQQNGLMFGNRLVRETGNVVFQDPAFRTDLVNFIHNCAMYDLIDG
SLDPATFSASNDVWPLMASPNPARFSTLTGAGGAVGVDTCPNVYQSLNGRLPAQLQRIQR
RLAFQLNPTLPGTAAAAAIAGQIQQAYLKNSIANASATAADIIRQNAMLNALEDTGKIVG
QKINDPASMVLAVGRAQAVAQMNASWLNYGKVAEQALPVFRNVIEAVTYAMFPLFVLLLL
LTSGRETMMAFKGYASILIWIQLWPPLYAILNYMASIYAAYDLAAAADLGTGAKALALQT
ASVIYSRALSGEAIVGYLAISIPFVAWAALKRMENFGTALVGGLSGLQATLSGSTSAATV
GNTSLGNVSMDQMQLAPNRTSAFMGSWQHDLSGNTFSSNALTGMTAVSLLRNQGYASRVV
SMRVSEQDVQDASRQVDAARSEAVAASSERSSVLAEAFTKGVAKLRSSRSSNGSTSSSFE
QFGETLNRLDQISKSVADTTGLTQSQVARIALGASGRLGVNTPIASLNGTASADKNYMSG
LSAAEQKVLTSMNSEQLAEFKQFGDRASQDRSFMNIIASDAREAQDLSARLSSTAARSER
ADASLAERSAFAERVSTAYERGETIAIDIAQDPHNLAMFTRYAEQYGGNSASARVLMEAE
LARQSLRPHSVFSDGTAVPMAFGDLQAQHLRNSGDPALAPDLTGRHQSNQGDVRRFGGGA
TPPTPTAGSASSMRSTVREEGKRIRATTSADQGTFDRKAQITRTPDGTLASERSLMMQTG
KQVKEDAAPLIDEAKEAVKKALKK