Protein Info for Ac3H11_2704 in Acidovorax sp. GW101-3H11

Annotation: Aerotaxis sensor receptor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 transmembrane" amino acids 167 to 185 (19 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details PF00989: PAS" amino acids 22 to 112 (91 residues), 45.2 bits, see alignment E=2.2e-15 PF13426: PAS_9" amino acids 22 to 107 (86 residues), 44.5 bits, see alignment E=4.1e-15 TIGR00229: PAS domain S-box protein" amino acids 23 to 113 (91 residues), 51.5 bits, see alignment E=5.4e-18 PF08448: PAS_4" amino acids 24 to 112 (89 residues), 23.9 bits, see alignment E=1.1e-08 PF08447: PAS_3" amino acids 31 to 114 (84 residues), 59.2 bits, see alignment E=1e-19 PF00015: MCPsignal" amino acids 330 to 485 (156 residues), 166.6 bits, see alignment E=1.2e-52

Best Hits

KEGG orthology group: K03776, aerotaxis receptor (inferred from 67% identity to ctt:CtCNB1_0955)

Predicted SEED Role

"Aerotaxis sensor receptor protein" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162F6U2 at UniProt or InterPro

Protein Sequence (519 amino acids)

>Ac3H11_2704 Aerotaxis sensor receptor protein (Acidovorax sp. GW101-3H11)
MRINLPVTQQNFDYSGDELLVSSTNTKGEITHCNPAFVRVSGYGYDELIGQPHNIIRHPD
MPAEAYKDLWRTIGRGEPWTGLVKNRRKNGDHYWVRANVTPILEGGKPRGYMSVRTKPSA
AEAAAAEALYAQMRREADAGSRSFSLEAGSVRYHGLRGWRQRLAQMALLPRMALMLAVLV
LLALVPDMLGLQGAAAWGARVALLVLGAGWVLWRFQATVLQGLHDATRFASDISACNLAT
SVGTDYPEPLGALMQRLQQTQVNLRAVVGDVRTEVGNFTRSAAEITRGSLDLSARTESQA
SSLEETAASMEQLASTVLQTAETAAKVSQESAQSSEVASLGGQAVQELGAAMQQMKHSSA
KISEIVGVIEGIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRALAQRSASSAREISG
LIGVTVDQIASGAQQMDHAGTTIRGVVDAVERVSALVQQISSATREQSQGIAQVNEAVTQ
LDTVTQQNAALVEQSTAAAQGLKDGAESLGRAMDVFRLG