Protein Info for Ac3H11_2652 in Acidovorax sp. GW101-3H11

Annotation: Rod shape determination protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 101 to 121 (21 residues), see Phobius details TIGR03739: PRTRC system protein D" amino acids 7 to 325 (319 residues), 534.9 bits, see alignment E=2.9e-165 PF17989: ALP_N" amino acids 7 to 155 (149 residues), 95.6 bits, see alignment E=3.6e-31 PF21522: MreB-like_C" amino acids 177 to 297 (121 residues), 65.5 bits, see alignment E=7.1e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to adk:Alide2_2765)

Predicted SEED Role

"Rod shape determination protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KY70 at UniProt or InterPro

Protein Sequence (343 amino acids)

>Ac3H11_2652 Rod shape determination protein (Acidovorax sp. GW101-3H11)
MELIVRAVDVGSGNTKFVTGVVGNEIRCASFPSVAYPSSGETPHWPASERRKTVCIPVGP
LFYEVGPDVGLAADTFRAKQLHDEYTESPEYMALLRGALSMMKVSHIDLLIVGLPVALFS
LKKSALEKTMAGEHQIGGGKTVTVAKAMAVAQPQGALVHYAAEHKKMATIGTEQSLVIDP
GSRTFDWLVTRGMRLVQKQSHSINRGMSDVLRLLAAEISKDVGSPYRDYDAIDLALRSGK
SPVIFQKPYDMGRHLPLAESVAQQAVSTMRQWIETPESLQNIILVGGGAFLFKKAVKAAF
PKHRIHEVKEPMFANVRGFQLAGQNYAASAIAPGRDRGAGEIA