Protein Info for Ac3H11_2290 in Acidovorax sp. GW101-3H11

Annotation: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 919 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details PF03924: CHASE" amino acids 82 to 271 (190 residues), 173.4 bits, see alignment E=9.7e-55 TIGR00229: PAS domain S-box protein" amino acids 369 to 488 (120 residues), 24.1 bits, see alignment E=3.2e-09 PF08448: PAS_4" amino acids 374 to 484 (111 residues), 49.6 bits, see alignment E=8.5e-17 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 491 to 657 (167 residues), 140.9 bits, see alignment E=3.1e-45 PF00990: GGDEF" amino acids 493 to 655 (163 residues), 159.9 bits, see alignment E=9.3e-51 PF00563: EAL" amino acids 675 to 908 (234 residues), 228.3 bits, see alignment E=1.8e-71

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KRN9 at UniProt or InterPro

Protein Sequence (919 amino acids)

>Ac3H11_2290 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (Acidovorax sp. GW101-3H11)
MASANAITRRRWVPLVLPPLVGMFALGLSYLYWQGEEDNVQAKNALNFEVAADQVAYNLK
DRMATYEVVLRGVKGYFEGSERISREEFKTYVEALQLQETRPGLQGVSLILHLFEPQLDL
HIADMRRRGFPHYSVLPSGVRAAYAPITHIEPLRGDNVRALGFDTLTMPAAREALERARD
SGELALSAPLTLLQNDTSTTAAQPGVVMYLPIYAPQADTSTQLVRRAGLVGWVSAPFRAG
DVIAGMARELDPDIEITLYDGLAKPGGLLLYGPSADKSPMASGGDKGAAPARQALRTLQI
GGRMWTLQMQPTPSFSLRHREDSHAMIAAVGVALGLLLSWLTWLLATGRERAVALAHGMT
TELRATRDDLESTLNAIPDLLFELGLDGRIHHYRSARSDLLAVPPEMFLGRLMSEVVPPE
AAAGCHAALEAAHHTGYSAGHQYRLELGGTTHWFELSIARKDAAAPGDEARFIALSRDIT
ERKQAEARSHQLAYFDGLTGLPNRRMLLDRMEHALHRALNAAEVGAVLYIDLDNFKQIND
ARGHTVGDALLMQVAQRLTQQLRPGDTVARLGGDEFVVLVHNVAADMESAGRAALLVAEE
IRAVLEAPYTIATHLYSTTGSIGITLFPKRGDGVEDLLREADTAMYRAKDLGRNRIRFYE
AAMQADVQERLALEQDLKKAQAEGQLAAFVQSQVDATGAVVGGELLMRWTHPVRGNVPPS
RFIPIAEASGLILRMGDWMIQQACETLARLQAAGRELSLSVNVSQRQFRQDDFVERVRHV
LAHTGAHPGNLILEMTESLLIEDLDDTIARMTEIVGLGVRFSIDDFGTGYSSLAYLKRLP
LFELKIDKSFVQDTPDDPSDTAIVQSILSVASHLNLRVVAEGVETRAQADFLLQNQCECL
QGYLFGRPEPLAVWLARQV