Protein Info for Ac3H11_2177 in Acidovorax sp. GW101-3H11

Annotation: Sensory histidine kinase QseC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 31 to 54 (24 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details PF00512: HisKA" amino acids 259 to 322 (64 residues), 49.7 bits, see alignment E=3.2e-17 PF02518: HATPase_c" amino acids 372 to 480 (109 residues), 74.4 bits, see alignment E=9.9e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168F5Y8 at UniProt or InterPro

Protein Sequence (502 amino acids)

>Ac3H11_2177 Sensory histidine kinase QseC (Acidovorax sp. GW101-3H11)
MSAAAMHAARAATTATAPGAPRLPSLIRRLIAWQALALVVAWLALASVMTWVALERSPED
IDTRLRETARILAEAAAGPEATLPARMLAAQGALLRITGRDLLGMAGLTHTRVLNTKGQV
LYRSSDDVPWPHTAMETTTETAPAPPSNPPWHLHTQAASDGSVVVQVAEPGALHLGALLP
VLWLVLKSQLGVFLWHGLVVWVTVRSGLAPLRQLAQRISRRRAGDLAPVQVDRLYAETAP
VVHELNALLAHEAQRLEAERRFLADAAHELRTPLAAINAQAHQLLTEPDPAAQADAAHAL
QQGITRASHLLTQLLTLARADAAAQPVAPAVHPTLDLADLLRNRVALLVPLARARRIELA
LNAPDHLSARLDREGLCSVIDNLVDNAIRYGVAGGSVELTLGTNDASPGGPIVLLVQDNG
RGIAPEHRARVWERFYRIPGTSEAGTGLGLAIAQRVVQRMGGTLGFADGLGGHGVGLRCV
LPREPLAAPGALPGTATAEKFE