Protein Info for Ac3H11_2089 in Acidovorax sp. GW101-3H11

Annotation: Type IV pilus biogenesis protein PilO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 798 PF14312: FG-GAP_2" amino acids 348 to 386 (39 residues), 27.8 bits, see alignment 1.2e-10 amino acids 393 to 434 (42 residues), 39.9 bits, see alignment 2e-14 amino acids 464 to 523 (60 residues), 30.7 bits, see alignment 1.5e-11 amino acids 530 to 589 (60 residues), 26.2 bits, see alignment 3.6e-10 amino acids 736 to 798 (63 residues), 28.8 bits, see alignment 5.7e-11

Best Hits

Predicted SEED Role

"Type IV pilus biogenesis protein PilO" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168F2Y8 at UniProt or InterPro

Protein Sequence (798 amino acids)

>Ac3H11_2089 Type IV pilus biogenesis protein PilO (Acidovorax sp. GW101-3H11)
MPRSAPLHSETPCPQRRKGAWVLHHGLPHTIGLPGALAGIRRRAARWLVGVAAGVLAACG
GGGGDAVPAPPPAAVLHPVGGQVSGLAGVLVLANGTRGELTITASGSYATQVAHGEAYDI
VVRTQPIGQTCLVENGTGVVAGPVTNVLVRCTANTYAVGGTVMGLAGALTLRLNGTSDLA
LTADGSFRFALAVPHGSTYSVAVQVQPVDQFCEANSATGVALAPVTQVRVTCRTIDVPPP
PPPPPPIAAAPLGLGITYGAKALNFSWLPATHATSYTVHEDPDGAGPLAAAQIGSTATTA
LAHAVPVLLHQRLNATYTVRACNISGCSAPSAPVAADMVQAIGYFKAASTAAEARFGNRV
ALSANGTTLAVGAYGEAGNTGAVYVFTRTGSTWSQQARITAPGGEANDYFGNAVALSADG
NTLAIGADGESGDQTGTFAAMPPSNNLASSSGAVYMYSRSGSTWSQQAFIKASNTFAFDL
FGSFVALSADGNTLAVGAYYESGDLTGTHGNAAFASSGAAYVFSRTGTSWAQQGYIKAAN
AGAGDFFGIYLSLSGSGDTLAVGAFFERSASAATPADDSLQDAGAAYVFQRTAGVWAQQA
YLKAPSPLALDRFGVAVMLSGDGNTLAVGMDGDSSDHTGVYVVPPASNSLALNSGAVFVY
TRAGGTWQPQAYLKASNTRTPHRFGNNLAMSSDGNTLVVPSYRDNSAATGFNGNQADTTA
ADAGAVLVFRRTAGTWAQQAYVKAPNTGSGDRFGGRVALSGDGNTLAVGASTEDGGSNGI
GGNQADESRTNAGAVYLY