Protein Info for Ac3H11_195 in Acidovorax sp. GW101-3H11

Annotation: Tricarboxylate transport protein TctC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 49 to 71 (23 residues), see Phobius details PF03401: TctC" amino acids 121 to 363 (243 residues), 55.1 bits, see alignment E=3.2e-19

Best Hits

KEGG orthology group: None (inferred from 67% identity to del:DelCs14_1554)

Predicted SEED Role

"Tricarboxylate transport protein TctC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JNL9 at UniProt or InterPro

Protein Sequence (379 amino acids)

>Ac3H11_195 Tricarboxylate transport protein TctC (Acidovorax sp. GW101-3H11)
MVTIATRLKETAMQLGNLLSQCAQADPTICTSPFFAKDRMTTSFNRRQILARATATGAIG
ALGAPFATSAWAQAAARSAPPKAPKLAGTLRIVIPANPGGGWDQTGRALGAALVGAGAAD
QVEYENIGGKGGTIGLAKYAEKYGNDANTLFMGGMVMVGAVALQKPAVDMGQIQPLARLT
SDYLVAAVAAKSPIKNTKDLADALRADLRGMPVAGGSAGGVDHMFAGVLARAAKAKPEEL
VYKPFPGGADVVEALVSGNAAVGLSGYSEFSDAIAAGKLRALGVSSRRSAFGLPAFREQG
LDAVMANWRGVFTGKGVAPARTAEMLAAVEAATHHESWTRTLKQNRWEPSWLTGKDLAEF
MELDLTTARVMVYLLKLKA