Protein Info for Ac3H11_1949 in Acidovorax sp. GW101-3H11

Annotation: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03480: DctP" amino acids 39 to 325 (287 residues), 242.3 bits, see alignment E=3.5e-76 TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 45 to 278 (234 residues), 199.6 bits, see alignment E=3.1e-63

Best Hits

KEGG orthology group: None (inferred from 88% identity to ajs:Ajs_0604)

Predicted SEED Role

"TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KMD9 at UniProt or InterPro

Protein Sequence (345 amino acids)

>Ac3H11_1949 TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein (Acidovorax sp. GW101-3H11)
MKLRTFLTSAVAAAAALAFTAPAAIAQTTYKSEYRMSLVLGTAFPWGKGGELWANKVRER
TQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQVKQLNLFSLPFLFPD
YAAVDAVTQGDVGKSIFATLDKAGVVPLAWGENGYREISNSKKAIKTPEDLKGLKIRVVG
SPLFLDTFTALGANPTQMSWADAQPAFASGAVDGQENPLSIFTAAKLHSVAQKNITLWGY
VNDPLIFVVNKEIWNSWTPADREIVKQAAIDAGKEEIAIARKGVVEADKPLLKDISALGV
TVTQLSPAERAAFVKVTRPVYDKWKGQIGADLVNMAEKAIAARKQ