Protein Info for Ac3H11_188 in Acidovorax sp. GW101-3H11

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 TIGR00229: PAS domain S-box protein" amino acids 25 to 137 (113 residues), 61.9 bits, see alignment E=3.3e-21 amino acids 150 to 263 (114 residues), 47.5 bits, see alignment E=9.3e-17 PF08448: PAS_4" amino acids 31 to 136 (106 residues), 47.2 bits, see alignment E=7.3e-16 amino acids 152 to 258 (107 residues), 29 bits, see alignment E=3.3e-10 PF00989: PAS" amino acids 34 to 132 (99 residues), 40.2 bits, see alignment E=9.6e-14 amino acids 154 to 254 (101 residues), 23.8 bits, see alignment E=1.2e-08 PF13426: PAS_9" amino acids 38 to 134 (97 residues), 51.3 bits, see alignment E=3.6e-17 amino acids 156 to 256 (101 residues), 36.4 bits, see alignment E=1.6e-12 PF08447: PAS_3" amino acids 43 to 128 (86 residues), 55.2 bits, see alignment E=2.2e-18 amino acids 165 to 250 (86 residues), 48.1 bits, see alignment E=3.6e-16 PF00015: MCPsignal" amino acids 295 to 447 (153 residues), 123.9 bits, see alignment E=2e-39

Best Hits

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165IYM0 at UniProt or InterPro

Protein Sequence (453 amino acids)

>Ac3H11_188 Methyl-accepting chemotaxis protein (Acidovorax sp. GW101-3H11)
MTVQHLSNSDYTSSGSDARAQALYTAVNRVQAVIEFSLDGRVLHANDNFLRTFGYSLQEV
VGQHHSIFCAPDFVKSHEYIAFWDRLERGDFHVGEYRRLDKQGREVWIQASYNPVLNAEG
RPESVVKFATDITAEKVRNTEFEGKLEALSRSQAVIEFDMQGNVLEANHNFLRALGYTLP
EIQGKHHSMFCTAALVKSAEYRNFWASLSLGEFQSGRYMRLGKHGAEIWIQATYNAIMDA
EGKPYKIVKFAMDVTEQVQREQMIREKVPEITSVLNQLSGTTDGVANSSQESLALALSAQ
EEASGGTVLLQRSREATRQIQNASRSVNDIVDTIREIASQTNLLAFNAAIEAARAAEHGL
GFSVVADEVRKLAEKSSSATRGISQLMTETLLRIEEGSRISEQVEDVFSRIVRAVGNSCE
AMKDIHKASVQQAQATHSAAQLLSELDGSTRVG