Protein Info for Ac3H11_1775 in Acidovorax sp. GW101-3H11

Annotation: ortholog of Bordetella pertussis (BX470248) BP2475

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 PF01713: Smr" amino acids 226 to 306 (81 residues), 93 bits, see alignment E=5.1e-31

Best Hits

Predicted SEED Role

"ortholog of Bordetella pertussis (BX470248) BP2475"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>Ac3H11_1775 ortholog of Bordetella pertussis (BX470248) BP2475 (Acidovorax sp. GW101-3H11)
VTAPAPAPTHPPTALQAALARAARTAAGGHAAAAEPAPAPAPPPSTIPRSARRAGLADKK
AAAKAAMRPLRHAPATPAAADNPAPPRRRAPPAPRRAGERITQLQDLATVARRLREEQER
REAEDKARREAAARAEAERHLFSRSVGPVTPLRNPNLARVRRHQPPPLPVQHWLDEERVL
MESISDDFDVSTLLDTDDQLSFRRPGIGVEITRRLRSGHWSIQRQLDLHGLRVDEAREAL
GDFIRHAHKTGLRCVRVVHGKGLGSPGKSPVLKGRVQRWLVQKNEVLAFVQARPMDGGAG
ALVVLLQPVLHRNT