Protein Info for Ac3H11_1768 in Acidovorax sp. GW101-3H11

Annotation: LysR family transcriptional regulator y2377 (Yersinia pestis KIM)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF00126: HTH_1" amino acids 6 to 65 (60 residues), 69.5 bits, see alignment E=1.9e-23 PF03466: LysR_substrate" amino acids 90 to 288 (199 residues), 109 bits, see alignment E=2.3e-35

Best Hits

KEGG orthology group: None (inferred from 80% identity to del:DelCs14_5747)

Predicted SEED Role

"LysR family transcriptional regulator y2377 (Yersinia pestis KIM)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KDV7 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Ac3H11_1768 LysR family transcriptional regulator y2377 (Yersinia pestis KIM) (Acidovorax sp. GW101-3H11)
MPTPSIKQLEAFWWAATCANFTTAADRVHVSVSSLSKRIAELESALGQPLFDRSGHRAVL
TEAGERLLPAALDVLQAMTALGQAVDARATLTGRCRFGVGDLSALTWLPTFVAAARHAHP
RLTLEPVVDVGSVLERRLDDGELDFAVIAGRSSRSSLLSQPIGAAHFTWAAAPGLPGAGR
MGAGALLQRHALVTLPPGAGTTRLLDDWLLAHRVTVGERILCNSWGAVAGMLRAGVGVGF
LPAGWAHTLGLRAVGGRTPLAPLHYAYQWRRGDTRALVAAMLRLAQAQVDFSAPPALAA