Protein Info for Ac3H11_1720 in Acidovorax sp. GW101-3H11

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF00126: HTH_1" amino acids 12 to 70 (59 residues), 63.9 bits, see alignment E=1e-21 PF03466: LysR_substrate" amino acids 95 to 292 (198 residues), 102.1 bits, see alignment E=3e-33

Best Hits

KEGG orthology group: None (inferred from 68% identity to ctt:CtCNB1_2541)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KCX0 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Ac3H11_1720 Transcriptional regulator, LysR family (Acidovorax sp. GW101-3H11)
MTQPPAESIGWELYRSFLGVLSEGSLSGAARALGVTQPTVGRHIAALEHALGLTLFTRSQ
QGLLPTDAAQALRPYAEAMQHSAAALARAASGHGEGVRGTVRVTASEVMGVEVLPPLLAQ
LQARHPGLTVELALSNRVQDLLHREADIAIRMTEPRQEALIARRVGVVALGLHAHASYLQ
AQGTPTSLLDLAHHRLIGFDQETPFIRAARKALPPWRREGFALRSDSDLVQLALIRAGGG
IGICQVELARRTPQLVRVLPQQFNAALDTWVVMHEDLRNSPRCRHTFDALVAGLLQYTGL
AEEGAGVAA