Protein Info for Ac3H11_1683 in Acidovorax sp. GW101-3H11

Annotation: LSU ribosomal protein L19p

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 TIGR01024: ribosomal protein bL19" amino acids 1 to 115 (115 residues), 162.2 bits, see alignment E=2.1e-52 PF01245: Ribosomal_L19" amino acids 3 to 115 (113 residues), 158.3 bits, see alignment E=3.2e-51

Best Hits

Swiss-Prot: 94% identical to RL19_ACIAC: 50S ribosomal protein L19 (rplS) from Acidovorax citrulli (strain AAC00-1)

KEGG orthology group: None (inferred from 92% identity to xtr:100495006)

MetaCyc: 66% identical to 50S ribosomal subunit protein L19 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L19p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KBZ4 at UniProt or InterPro

Protein Sequence (128 amino acids)

>Ac3H11_1683 LSU ribosomal protein L19p (Acidovorax sp. GW101-3H11)
MNLIQTLEAEEIARLNKTIPEFAPGDTVIVSVNVVEGTRKRVQAYEGVVIAKRNRGLNSG
FTVRKISSGEGVERTFQTYSPLIAGIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQRV
KVAAATAA