Protein Info for Ac3H11_1678 in Acidovorax sp. GW101-3H11

Annotation: macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 300 to 318 (19 residues), see Phobius details amino acids 346 to 367 (22 residues), see Phobius details PF16491: Peptidase_M48_N" amino acids 35 to 213 (179 residues), 216.4 bits, see alignment E=2.8e-68 PF01435: Peptidase_M48" amino acids 216 to 429 (214 residues), 121.7 bits, see alignment E=3.5e-39

Best Hits

KEGG orthology group: K06013, STE24 endopeptidase [EC: 3.4.24.84] (inferred from 80% identity to vei:Veis_0323)

Predicted SEED Role

"macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.24.84

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KEQ5 at UniProt or InterPro

Protein Sequence (436 amino acids)

>Ac3H11_1678 macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides (Acidovorax sp. GW101-3H11)
MPTPDDLSPSMLLTLAFAAALVLGLALKFWLATRQVRHVARHRAAVPAPFAERIPLAAHQ
KAADYTMTKARLGLLEMALGCVVLLGWTLLGGLDALNRTLLDAMGPGMAQQLALLVAFAA
IGGLIDLPLSLYQTFVIEERFGFNKMTWRLWLADAAKGLLVGALIGLPIAALILWLMGAA
GPLWWLWAWCFWMGFNLLLMVIYPTFIAPLFNKFQPLEDESLKARVTALMQRCGFSAKGL
FVMDGSRRSAHANAYFTGFGAAKRVVFYDTLLKQLAPGEVEAVLAHELGHFKHRHIIQRI
VVMFGLSLAGFALLGWLSNQVWFYTGLGVRPNISLDPSIAAAPNDALALLLFMLVVPVFT
FFISPLFSQQSRKHEFQADAYAVAQASGADLASALLKLYEDNASTLTPDPVYVKFYYSHP
PATERLARMHNNPAHP