Protein Info for Ac3H11_1639 in Acidovorax sp. GW101-3H11

Annotation: Probable two-component response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 transmembrane" amino acids 13 to 35 (23 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details PF12860: PAS_7" amino acids 94 to 208 (115 residues), 59.4 bits, see alignment E=9.5e-20 amino acids 230 to 341 (112 residues), 34 bits, see alignment E=7.2e-12 amino acids 368 to 477 (110 residues), 53.6 bits, see alignment E=6e-18 amino acids 499 to 614 (116 residues), 83.5 bits, see alignment E=3.1e-27 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 625 to 792 (168 residues), 169.8 bits, see alignment E=2.2e-54 PF00990: GGDEF" amino acids 628 to 788 (161 residues), 168.9 bits, see alignment E=2e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KB02 at UniProt or InterPro

Protein Sequence (796 amino acids)

>Ac3H11_1639 Probable two-component response regulator (Acidovorax sp. GW101-3H11)
MHRTTPPTLPRGHLLALLVAGVCGAGGLALLTWALASRSMDLATRIAFTAAGAGLVASAL
LSWWLVRQVWALRATASEAQAAARRASTQLSATLDILPDGLAIYDADDRLVLCNAQYREV
NTGTSMAVEYGTLFEDVLRRAARSGHIVDARPDVDTWLAHRMARHRAPELPEVQEVEGDR
WMRITERLTEGGGVVVLRADITDVVHKERALKQALHDAERAERSLREAVNAMPAGLEIYD
ESDRLVLCNDQMARLRPHLPVAESLGKTYEELLRAGLRHGIPQEASGQEELWLAHEMALR
GHRPGPEVRHYPNGAWMHMHESRTPSGMTVVVRLDISDLIEQRHKVDAARQENQRIRQLL
ERAVEALPVSIEIFDEQDRLVLFNQQLSRMYPHMNYAEHLGKGFADILRYSVERGLIPSA
QGREEAWIAERLSEHGSRTSTLVQRLADGRWINIYETRTPENYVVAVRLDITDLIEQRQA
LESAQEAAQQARQLLQDAVESLPEGFALFDADDRLVVCNAQYRRLYPISAPVIVPGSTFE
QIARYGAERGQYLDAVGNEEGWVAQRVADHRAANQAVLQRLPEGRWLQADERRTPQGGIA
GVRTDVTQLVRKEQELAAANAKLALLSTTDGVTGISNRRRFDERLAAEWMRCGRHHLPLA
VVLIDIDHFKLYNDHYGHLAGDECLRRVAQLLQGNIRRADEIAARYGGEEFVLLLPDATV
ADAVTAAQRCMDSLREAALAHPRSPTAPTVTLSAGVASMVPRPGAQPDSLVQAADAALYR
AKHGGRNRLEVFDPGP