Protein Info for Ac3H11_1612 in Acidovorax sp. GW101-3H11

Annotation: ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 99 to 124 (26 residues), see Phobius details amino acids 130 to 154 (25 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 205 to 210 (6 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 251 (172 residues), 48.6 bits, see alignment E=4.1e-17

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 91% identity to vei:Veis_0756)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KAF5 at UniProt or InterPro

Protein Sequence (264 amino acids)

>Ac3H11_1612 ABC transporter, permease protein (Acidovorax sp. GW101-3H11)
MQKNGPIALAFNALVITFMLAPLLVVCIVAFTPHNTLTLPTTEFSLRWFKAVFEHSDFVQ
SFWNSLWLALASATLATALAVPAGIAITRYDFPGRGFLNGLFLSPLIIPHLVLGVALLRL
FALIGGTGSFGWLVVAHALIVTPYTLRLVVAALVGFDRSAEHAALSLGASQATVFTRITL
PMILPGVTGGWMLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV
AVTAFAMVLLDRVYGLDRVLVGRK