Protein Info for Ac3H11_1559 in Acidovorax sp. GW101-3H11

Annotation: Response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 PF00072: Response_reg" amino acids 24 to 136 (113 residues), 86 bits, see alignment E=2e-28 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 164 to 330 (167 residues), 147.5 bits, see alignment E=1.4e-47 PF00990: GGDEF" amino acids 169 to 328 (160 residues), 155.2 bits, see alignment E=1.3e-49

Best Hits

KEGG orthology group: None (inferred from 82% identity to aaa:Acav_1218)

Predicted SEED Role

"Response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KE99 at UniProt or InterPro

Protein Sequence (344 amino acids)

>Ac3H11_1559 Response regulator (Acidovorax sp. GW101-3H11)
VPFSSSNAPYPAAEPLPSGNAFSVLVVEDQGSVRAALVAELRRAGVSNIFEAPEGQAALH
LFKTHRPDLVLLDIKLPGQDGYWVAQQMRESEAGDWTPIIFLSGLDNELDVWRGIEVGGD
DYLVKPVKPIVLMAKLRAMRRLLDMRRRLVLMSAELHAANQRLNEMVEIDALTGLVNRRG
FDRILHNEILAARRDGTPLTLMLCDLDHFKLFNDASGHVQGDSCLKEVGRLLREVCVRPR
DVASRYGGEEFALILPNTPRSGAMTFARALGQLLKVRAIAHANSPLGDILTLSGGITTCV
PDDSTNAESMIMRADQALYASKAQGRNRFFSFEMQMDTVEQLRN