Protein Info for Ac3H11_1202 in Acidovorax sp. GW101-3H11

Annotation: probable integral membrane protein NMA1898

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 681 transmembrane" amino acids 98 to 116 (19 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 296 to 317 (22 residues), see Phobius details amino acids 526 to 547 (22 residues), see Phobius details amino acids 555 to 576 (22 residues), see Phobius details PF11067: DUF2868" amino acids 186 to 482 (297 residues), 76 bits, see alignment E=4e-25 PF11981: DUF3482" amino acids 529 to 587 (59 residues), 38.4 bits, see alignment 9.9e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LBH8 at UniProt or InterPro

Protein Sequence (681 amino acids)

>Ac3H11_1202 probable integral membrane protein NMA1898 (Acidovorax sp. GW101-3H11)
MRVTEPQLRTLLLAQAIEQADTRHTLVSAVELQDATRSAVAAARARGLPRVGVAEVMLER
ATTIANHASGRDSTVAALHAPHAPHAPHTQRPGAGGLGPWVARGLPLAALLLGLAIDRIS
NAHRVDLLSPPLLTVLAWNLAVYLLIAWRAMRPPQAPGAWLQQALRPLHHPFGRAERGRG
LAARIAADFHQRWWAHATDLLQQRAARVLHLCAAAWGAGIALSLLLRGLVVRYQFGWEST
FLDATQVHAIVSVLFAPLTLLLGLAPFTLQEIAATQNFAGESGAAGMGGAAGSRWVGMYV
GLLLLAVVLPRLALAAWARWREHRWQGHIDPQGPAFDTLRASLPGDLVIGLRGPQAQAQV
LLGARLQTPEGDHLRFTDHTGHTDQPVDAVLAWTTDPIPPAWQAAPRMALRWEDFGASWV
LEPTLFDRLSTALPAQHHALARLRAAWVERNEQRFGQALQALAQHLRACAALTRLPPDAA
AAQYADQVRVLDATLRALHGEPAAPAMPSAQLAPPLPAPRRIDGTALALGTSAGAAAGAA
AGAKAGALIDLGTGGLTLGAGTALGALLGGTTAWVVRSLQKKDAGRQDLLQHAAEAACSH
YLAVAHQQRMPPDAAHPWAARWHAEVTGTVAAHGAALTAALQDGADPAALAPLLRTVLMG
ILLRSGAAEGAGAAPAGPLVG