Protein Info for Ac3H11_1199 in Acidovorax sp. GW101-3H11

Annotation: Probable transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 456 to 477 (22 residues), see Phobius details PF13163: DUF3999" amino acids 37 to 476 (440 residues), 314.9 bits, see alignment E=5.4e-98

Best Hits

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LBD7 at UniProt or InterPro

Protein Sequence (495 amino acids)

>Ac3H11_1199 Probable transmembrane protein (Acidovorax sp. GW101-3H11)
MKKPAALNLPLGLAAAALSLCAGVAQAAADASSPAAYTIRIPVTLAADAPLQRVVLPAEV
LVRLQSPGYADVRLFNGAGQPVPMALAGVAAASAPEESVTLPAYPILGAASTGAAGLEGL
SLRIEERQGQRVVQIDTAGTAGATATQAVRGALLDARNVQLPVARMALDVDLPAGQPVTF
RVQASKDLKHWQPLAETVLYRADAAAAPTVSTAPGRLGNEQIDLQRADLKSHYLRVTWGD
AAVTLRGATLATARSMGPRERVSARMAMPPLGNNPRELVLALPFATPVAALAITPPGSNV
LLPVRVLGRNHREQPWSPLASAVVYKMATGGKEQTSGPVELGGASVREIKIEADPKTPGF
AAAPALALQFEPAQLVFLASGQGPFTLAAGLPGATAAASAFLPLASLVPGYQPAQENTLP
VALADVARADITGGQPADGALVPAAAASGGISTRSAVLWGVLLAGVVALGLMAWLLLRQT
KQAGTQAPAAPTDAA