Protein Info for Ac3H11_1178 in Acidovorax sp. GW101-3H11

Annotation: TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 51 to 72 (22 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 141 to 167 (27 residues), see Phobius details amino acids 174 to 199 (26 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details amino acids 367 to 393 (27 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details PF06808: DctM" amino acids 11 to 429 (419 residues), 293.8 bits, see alignment E=1e-91 TIGR00786: TRAP transporter, DctM subunit" amino acids 22 to 434 (413 residues), 276 bits, see alignment E=2.3e-86

Best Hits

KEGG orthology group: None (inferred from 74% identity to rfr:Rfer_2569)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LAR4 at UniProt or InterPro

Protein Sequence (439 amino acids)

>Ac3H11_1178 TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 (Acidovorax sp. GW101-3H11)
MSPLLLALCIFGVMLALMVVRVPIAAAMFAAGAFGYLYQVGLPPFLNNLNGLAFARFASY
DLSVIPLFILMGNFATQGGISKALFQFASVLMARFKGGLAMAAVGASAAFGAICGSSIAT
AATITSVALPEMKRHGYSGRLATGTLAAGGTLGILIPPSVPLVIYAILTEQNIAKLFAAA
TIPGIIAMLGYMIAIAIYVRIRPGHAPDHTVDLPKMSLQALMGVLPIAIVFLVVFGGIYG
GLFTPTEGAGVGVACTFVAALLKRELTLEKVKQCFLSTASASAMIFMIFIGADMMNTALA
LTQVPGQLASLIQGWNVSPYLVVAGILIFYVVLGAVMDELSMILLTIPIFFPVIMGLDFG
MSQEHTAIWFGIMVLMTVGFGLLAPPVGLNVYVVNGMAKDVPIAESYKGVMPFLASDVVR
TTLLLLFPPISLWLVQFVG