Protein Info for Ac3H11_11 in Acidovorax sp. GW101-3H11

Annotation: Peptidase, M23/M37 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF18421: Peptidase_M23_N" amino acids 59 to 118 (60 residues), 30.3 bits, see alignment E=3.4e-11 PF01551: Peptidase_M23" amino acids 223 to 317 (95 residues), 96 bits, see alignment E=1.3e-31

Best Hits

Predicted SEED Role

"Peptidase, M23/M37 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165HY79 at UniProt or InterPro

Protein Sequence (323 amino acids)

>Ac3H11_11 Peptidase, M23/M37 family (Acidovorax sp. GW101-3H11)
VPAPSPHPVHPTFFTRRAALASAGGLLLAPAMGLHAKPQPASATKPPAAPAVWSQALQVP
GGVARLSLGPAAARPRALVRQGDVDVPVLVVGDVIEWTAIVGIPLAASPGDAFITVLADG
NGNGNGNGNGNGNGSPRPLHYTVAAKRYKEQHLQVSPRTVDLSPEDQARYERERDHQAGV
MATFTELPAGQAQPSLRMRVPVPGRRSSSFGLRRVFNGQPRNPHSGMDIAAPTGTPIVAP
LAGRVIDVGDYFFNGGTVWLDHGQGLLSMYCHLSRMDVRVGDVLQAGDAFCQVGATGRVT
GPHLHWGVMLNRTMVDPALFIPA