Protein Info for AZOBR_RS33175 in Azospirillum brasilense Sp245

Annotation: exported protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 836 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details PF02534: T4SS-DNA_transf" amino acids 386 to 738 (353 residues), 120 bits, see alignment E=1.9e-38 PF10412: TrwB_AAD_bind" amino acids 496 to 706 (211 residues), 23.2 bits, see alignment E=4.7e-09 PF12696: TraG-D_C" amino acids 582 to 704 (123 residues), 51.1 bits, see alignment E=2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8B134 at UniProt or InterPro

Protein Sequence (836 amino acids)

>AZOBR_RS33175 exported protein of unknown function (Azospirillum brasilense Sp245)
MVEEIERQKAIAWFVMSALIGLLAAAALLTCAFPLYKLFNRLDFSRSTATWPALGALHDP
GWRPGFSLRWLRDTGAYYAIGLWQYPTLWAKPLWVLLVQAPLEVWGMPHWSVMVSLAAGL
LVALRVAERCPYELQRKSHGSARFATDRDIRKAAWDAKDRYVKKRGLYSPTGIVLGRAPN
GRLLRMPETLSAILIAPPGSGKSAGIILPNLLADWPEYQPILGFETFGWALGRKTYCPKP
TFVVNDPKGELYAKALKWLIKAGYKVIRLSLGSMDGDRWNPLGFDSLPGGREVPRTRTRI
LDALGRVYADPIRALEILMVEVRDRTDWVAALGADPTLGGRLVIRDEVIALEADALATWT
SPARATLKDVLGDIMKLFTWQAQREQYVKRLATMAIDEKIEPHWRDKGRAALQGFSLFTI
YRCEADPQLGEPSFGRLIDFMTEATKNFQPDPTAGEDQDAVASMLQAWIAEAEQRGYPAR
VITELASLSRTPSKERGSVLSTMEGGIDIFKVATVRSRTSASDFGLDELRFSKKPVALFI
VTPLEDAVALGKITGMFFESSAARFISQDEKDIKTKGRPIIYLADEFWTLPTGMESFLQI
PALGRGQWVQLLLVGQSYGQIALKINKEAVGILKSAVGAQILLQQNDSETAEAVSKAVGN
YTAITANVSQTEGAGKEVKMFQWNTSRSATGLPLLPAQRLLTMRKLEEQYVLYQGMMSRP
IECSSPAWFNDPVMTERLTGERPGGLARFGRFVAAMLPRTASPAPLVGAARTDDEFERAA
AAAIAAAVAAQEQKVANQNAVLGQAPAGAAPPSQGSTFQPASGADFVAGDDQSKAA