Protein Info for AZOBR_RS30910 in Azospirillum brasilense Sp245

Annotation: (Fe-S)-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 50 to 68 (19 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details TIGR02745: cytochrome c oxidase accessory protein CcoG" amino acids 46 to 497 (452 residues), 498.7 bits, see alignment E=8e-154 PF12801: Fer4_5" amino acids 106 to 142 (37 residues), 35.1 bits, see alignment 4.7e-12 PF13746: Fer4_18" amino acids 229 to 337 (109 residues), 143.3 bits, see alignment E=1.7e-45 PF12800: Fer4_4" amino acids 284 to 298 (15 residues), 15.7 bits, see alignment (E = 7e-06) amino acids 308 to 319 (12 residues), 13.6 bits, see alignment (E = 3.3e-05) PF11614: FixG_C" amino acids 376 to 499 (124 residues), 90.5 bits, see alignment E=4e-29

Best Hits

Swiss-Prot: 49% identical to RDXA_RHOS4: Protein RdxA (rdxA) from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

KEGG orthology group: None (inferred from 62% identity to azl:AZL_b04870)

Predicted SEED Role

"Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation" in subsystem Biogenesis of cbb3-type cytochrome c oxidases or Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZM0 at UniProt or InterPro

Protein Sequence (499 amino acids)

>AZOBR_RS30910 (Fe-S)-binding protein (Azospirillum brasilense Sp245)
MQNLARSSSLPPPPSAPAPSSPASSTPAPFYASHQKIYPKAARGRFRRIKSALMVGLLAL
FMLLPWLRWDRGAGLPNQAILFDLDSQRFYLFALELWPQHIYYLTGAMILAAVGLFLATA
LAGRVWCGYTCPQTVWTDLYVKVEEWIEGDRGARIRLDNGPRNAGWLAKKTAKHVVWLLI
ALVTGASALFYFVDAPGYVADLLRFQPGPVATGWILFMTACTYAMAGFMREQMCVYVCPW
PRIQAALLDDESLTVTYQDWRGDGRAPLRKEQSWAERSAEGLGDCIDCKACVQVCPTGID
IRDGLQMDCISCGLCIDACDDVMGRIGRPGGLIRYDTQSAQEAKAVARKPEPYRLVRPRT
IIYSLVMLVVGGMMTLGVLLEPTVDVSVLRDRAPLYVTLSNGAIQNSYTVKISNMTRAPQ
GYRLTVSGPRGATVTAAGGGGADGPAPVLGAEPDTVQTHRVHVRAPAGAAVAGSMPLTLT
LTRLSDGVAHHAETVFLAP