Protein Info for AZOBR_RS30690 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 67 to 83 (17 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 183 to 200 (18 residues), see Phobius details PF20554: DUF6766" amino acids 1 to 219 (219 residues), 317.1 bits, see alignment E=2.4e-99

Best Hits

KEGG orthology group: None (inferred from 52% identity to gbr:Gbro_4323)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZG3 at UniProt or InterPro

Protein Sequence (220 amino acids)

>AZOBR_RS30690 membrane protein (Azospirillum brasilense Sp245)
MRRFLRDNGLSVALFGLFLVSIVGQVLAGWRTLAEELRLHAQPPVGFLDYLTTGHFLSAT
FENWESEFLQMSVYVLLTAILVQKGSSESKKPGEANPEDEAPQRRRGDPDAPWPVHRGGL
LLRLYSHSLSIALVTLFVMSFVLHLAGSTRRSNEEAAWHHQPTKTMGETLADPEFWYESF
QNWQSEFLSMGVLVVLGIYLRERGSPESKPVAAPNRQTGD