Protein Info for AZOBR_RS30440 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 PF00005: ABC_tran" amino acids 22 to 180 (159 residues), 113.8 bits, see alignment E=3.5e-36 amino acids 373 to 524 (152 residues), 111.8 bits, see alignment E=1.5e-35 PF13304: AAA_21" amino acids 83 to 216 (134 residues), 29.5 bits, see alignment E=2.7e-10 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 229 to 316 (88 residues), 78.4 bits, see alignment E=5.2e-26 amino acids 575 to 662 (88 residues), 54.2 bits, see alignment E=1.9e-18 PF08352: oligo_HPY" amino acids 231 to 296 (66 residues), 67 bits, see alignment E=5.2e-22 amino acids 577 to 640 (64 residues), 43.6 bits, see alignment E=1.1e-14

Best Hits

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZA5 at UniProt or InterPro

Protein Sequence (682 amino acids)

>AZOBR_RS30440 hypothetical protein (Azospirillum brasilense Sp245)
LLEVRNLTINYASPRGTLRAASDVSFAIRPGEVMGLVGESGSGKSTVAMAILDLLGEAGR
IDGGEILFEGTDLRRLSAAHRRSLRGDRIAAVFQDPFTSLNPALTVGRQIAEPLVQHKGF
TPRQAAPRVEELLAEVGIREPRRIAQSYPHQLSGGMQQRVLIATALGCDPKLLILDEPTT
ALDVTVEARIIELLAGLCESHHLSALFVSHNLGIVNRICNSVCVLYGSEVVETGRTRDVL
ARPVHPYTKGLVAALPRITTDRRHRLSSIPGTVSKLSGASESCVFAPRCPFAEETCRRLP
QALRGDAAGNSVRCWKAEALAGTPWPEESTASRPQAAPPARTAPLVQVDALRKVFGERRS
ILPWLRRDGTVAVDDVSFTIQRGEVLGVVGESGSGKSTIGRSLLALIEPTAGTVLFDGAD
FVKQAKEGNRDLRRRAQLVFQNSAASLNPRKTVGAAMERPLVLAGRQGEAERREMIAALL
TRVGLPAAYADRYPHELSGGERQRVNIARALATDPEFVVCDEAVSALDVSVQANILNLLA
DLRDELGLSYLFITHDIAVVSHIADRVLVVYGGTICEEGPIGRVLRPPYHPYTEALLSAV
PRLSGAEDGPEPERILLEDSTAPPGGGGCAFRGRCPRKLGAICDERAPPVQTATDGHRIA
CHIPLAELAERASVFPELAALH