Protein Info for AZOBR_RS30270 in Azospirillum brasilense Sp245

Annotation: DNA polymerase III subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 PF01909: NTP_transf_2" amino acids 13 to 88 (76 residues), 43.9 bits, see alignment E=2.6e-15 PF18765: Polbeta" amino acids 14 to 98 (85 residues), 43.1 bits, see alignment E=3.9e-15

Best Hits

KEGG orthology group: K07075, (no description) (inferred from 67% identity to chl:Chy400_2264)

Predicted SEED Role

"DNA polymerase, beta domain protein region"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZ67 at UniProt or InterPro

Protein Sequence (101 amino acids)

>AZOBR_RS30270 DNA polymerase III subunit beta (Azospirillum brasilense Sp245)
MPTRLFPDDAALASVCRRHRIRRLALFGSMLKGSNRHDSDVDLLVEFEPEAKPGLLTMAR
IEIELSPLVGGRKVDLRTAQDLSRYFRDEVVRMAEVQYEAR