Protein Info for AZOBR_RS30120 in Azospirillum brasilense Sp245

Annotation: C4-dicarboxylate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 6 to 34 (29 residues), see Phobius details amino acids 43 to 43 (1 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 94 to 122 (29 residues), see Phobius details amino acids 134 to 160 (27 residues), see Phobius details amino acids 168 to 194 (27 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 305 to 328 (24 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details PF06808: DctM" amino acids 8 to 416 (409 residues), 353.7 bits, see alignment E=6.8e-110 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 422 (406 residues), 392.4 bits, see alignment E=1e-121

Best Hits

KEGG orthology group: None (inferred from 82% identity to bbt:BBta_0130)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZ33 at UniProt or InterPro

Protein Sequence (427 amino acids)

>AZOBR_RS30120 C4-dicarboxylate ABC transporter permease (Azospirillum brasilense Sp245)
MELTILAVTFFGFLVLGIPVAFAIGLSALCTILYEGLPVAVIFQQMMSGMNVFSFLAIPF
FVFSGELMLHGGVADKIVATAKNMVGHIRGGLGMSNVVACTLFGGVAGSPVADVSAMGAV
MIPMMKREGYHADYAVNVTTHAALVGALMPTSHNMIIYALAAGGKASIGALIAAGIVPAL
LLMVCNLGAAYYVAVKRGYPPGTFPGWSILGRSFAAAAPGLLIVVIILAGITSGVFTATE
SASIAVIYALLLTTFVYRTLTWDHFLAAAAKTVKTTGVVLLLIGVSTMFQYIMGLYQVAE
ITGELMAGISTNPLVIFLLINIILFLLGTFMDMASTILICTPIFLPIAMQYGMDPVQFGI
VMLINCALGLNTPPVGTTQFIGCAIGEVSVGQVMRSITPFYGALFVTLLLVTYVPTFSLW
LPHMLMR